Carl Love

Carl Love

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12 years, 320 days
Himself
Wayland, Massachusetts, United States
My name was formerly Carl Devore.

MaplePrimes Activity


These are replies submitted by Carl Love

@Teep @Daniel Skoog

Daniel asked me if he could use my code in his package, and I said yes. It's very likely that he will see this and respond soon because I tagged him above, and he's a regular correspondent here. 

Wikipedia is good place to start reading about cluster analysis. My code used algorithms that I found on Wikipedia.

That's interesting. My test shows that using Newton's method is much faster and much more accurate than Statistics:-Quantile and works over the whole interval 0..1.  I wonder if this is a version difference. If you post another test, please show kernelopts(version)Digits, and a randomize seed so that your results can be duplicated.
 

Time and accuracy test of Newton's method inverse CDF of the Normal distribution

restart:

kernelopts(version);

`Maple 2019.1, X86 64 WINDOWS, May 21 2019, Build ID 1399874`

#Symbolic steps:
Ncdf:= unapply(int(exp(-x^2/2)/sqrt(2*Pi), x= -infinity..X), X):
Newton:= unapply(simplify(x-(Ncdf(x)-Q)/D(Ncdf)(x)), (x,Q)):

#Purely numeric procedures:
NormInv_inner:= proc(Q, eps)
local z:= 0, z1;
   do  z1:= evalf(Newton(z,Q));  if abs(z1-z) < eps then return z1 fi;  z:= z1  od
end proc:
      
NormInv:= (Q::And(numeric, realcons, satisfies(Q-> 0 <= Q and Q <= 1)))->
   if Q > 1/2 then -thisproc(1-Q)
   elif Q = 0 then -infinity
   elif Digits <= evalhf(Digits) then evalhf(NormInv_inner(Q, DBL_EPSILON))
   else NormInv_inner(evalf(Q), 10.^(1-Digits))
   fi
:

Digits:= 15:

randomize(1):

S:= Statistics:-Sample(Uniform(0,1), 10^4):

N_Newton:= CodeTools:-Usage(NormInv~(S)):

memory used=18.47MiB, alloc change=0 bytes, cpu time=156.00ms, real time=168.00ms, gc time=0ns

N_Quantile:= CodeTools:-Usage(Statistics:-Quantile~(Normal(0,1), S)):

memory used=233.92MiB, alloc change=80.00MiB, cpu time=4.05s, real time=4.05s, gc time=125.00ms

Statistics commands tend to run faster if you first declare a RandomVariable::

N01:= Statistics:-RandomVariable(Normal(0,1)):

N_rv:= CodeTools:-Usage(Statistics:-Quantile~(N01, S, numeric)):

memory used=168.77MiB, alloc change=-8.00MiB, cpu time=1.38s, real time=1.32s, gc time=109.38ms

Check the accuracy:

LinearAlgebra:-Norm(N_rv - N_Quantile, 1);

0.

Digits:= 20:

N_accurate:= CodeTools:-Usage(Statistics:-Quantile~(N01, S)):

memory used=0.92GiB, alloc change=128.00MiB, cpu time=7.42s, real time=7.03s, gc time=812.50ms

LinearAlgebra:-Norm(N_Quantile - N_accurate, 1);

0.2107616253607440e-8

LinearAlgebra:-Norm(N_Newton - N_accurate, 1);

0.167337146261280e-9

Conclusion: This particular Sample shows that using Newton's method (at Digits=15) gives about 12 times the accuracy while running at least 5 times as fast.

 


 

Download NormalInveseTest.mw

@mmcdara I'm surprised that there's been such a change in the numeric computation model. Anyway, here are some minor adjustments, which I hope will also work in your Maple. I also corrected the issue for Digits > 15.

restart:
Digits:= 20: #Changing this doesn't change the code; it's just for testing.

#Symbolic steps are only needed to create the numeric procedures, not
#needed to run them:
Ncdf:= unapply(int(exp(-x^2/2)/sqrt(2*Pi), x= -infinity..X), X);
Newton:= unapply(simplify(x-(Ncdf(x)-Q)/D(Ncdf)(x)), (x,Q));

#Purely numeric procedures:
NormInv_inner:= proc(Q, eps)
local z:= 0, z1;
   do  z1:= evalf(Newton(z,Q));  if abs(z1-z) < eps then return z1 fi;  z:= z1  od
end proc:
      
NormInv:= (Q::And(numeric, realcons, satisfies(Q-> 0 <= Q and Q <= 1)))->
   if Q > 1/2 then -thisproc(1-Q)
   elif Q = 0 then -infinity
   elif Digits <= evalhf(Digits) then evalhf(NormInv_inner(Q, DBL_EPSILON))
   else NormInv_inner(evalf(Q), 10.^(1-Digits))
   fi
:
#Testing code:
P := [seq(1 - 10.^(-k), k=1..Digits)]:
printf("           p                  z\n");
printf("-----------------------------------\n");         
for n from 1 to numelems(P) do
   printf("%2d  %0.*f  %2.5f\n", n, Digits, P[n], NormInv(P[n]))
end do;
           p                  z
-----------------------------------
 1  0.90000000000000000000  1.28155
 2  0.99000000000000000000  2.32635
 3  0.99900000000000000000  3.09023
 4  0.99990000000000000000  3.71902
 5  0.99999000000000000000  4.26489
 6  0.99999900000000000000  4.75342
 7  0.99999990000000000000  5.19934
 8  0.99999999000000000000  5.61200
 9  0.99999999900000000000  5.99781
10  0.99999999990000000000  6.36134
11  0.99999999999000000000  6.70602
12  0.99999999999900000000  7.03448
13  0.99999999999990000000  7.34880
14  0.99999999999999000000  7.65063
15  0.99999999999999900000  7.94135
16  0.99999999999999990000  8.22208
17  0.99999999999999999000  8.49377
18  0.99999999999999999900  8.75680
19  0.99999999999999999990  9.01253
20  0.99999999999999999999  9.24939

 

I haven't researched or time- or accuracy-tested them, but I find it hard to believe that any of these "magic coefficients" methods are generally better than this simple Newton's method, which only took 10 minutes to write, can be understood immediately, and works for any setting of Digits or in evalhf mode.

(*>>>------------------------------------------------------
| A procedure to compute quantiles of the standard normal |
| (Gaussian) distribution in sfloat or hfloat arithmetic  |
|---------------------------------------------------------|
| Author: Carl Love <carl.j.love@gmail.com> 15-Aug-2019   |
------------------------------------------------------<<<*)
restart:
Digits:= 15: #Changing this doesn't change the code; it's just for testing.

#Symbolic steps are only needed to create the numeric procedures, not
#needed to run them:
Ncdf:= unapply(int(exp(-x^2/2)/sqrt(2*Pi), x= -infinity..X), X);
Newton:= unapply(simplify(x-(Ncdf(x)-Q)/D(Ncdf)(x)), (x,Q));

#Purely numeric procedures:
NormInv_inner:= proc(Q)
local z:= 0, z1;
   do  z1:= Newton(z,Q);  if z1=z then return z1 fi;  z:= z1  od
end proc:
      
NormInv:= (Q::And(realcons, satisfies(Q-> 0 <= Q and Q <= 1)))->
   if Q > 1/2 then -thisproc(1-Q)
   elif Q=0 then -infinity
   elif Digits <= evalhf(Digits) then evalhf(NormInv_inner(Q))
   else NormInv_inner(evalf(Q))
   fi
:

I'll admit that the rational-approximation methods may be a little faster for some small values of Digits.

@syhue The following very short and simple paper explains how and why to divide out the 2s when computing the decryption exponent d for a two-prime RSA via the Chinese Remainder Theorem (CRT). In particular, I draw your attention to step 4 at the very top of page 258 and the explanatory paragraph a little below that begins "To apply [CRT] in step 4...." The paper is "Faster RSA Algorithm for Decryption Using Chinese Remainder Theorem"[*1]. This idea can be extended fairly easily to your three-prime RSA. Note that this special CRT is only needed once---for computing d; when you're decrypting, you'll use the three primes themselves as the moduli for CRT.

Let me know if you need further help.

[*1] G.N. Shinde and H.S. Fadewar, (2008), "Faster RSA Algorithm for Decryption Using Chinese Remainder Theorem", ICCES, vol.5, no.4, pp.255-261

@acer Thanks, your first interpretation of my question was correct: how the box was obtained within Maple's GUI.

How did you get that box shown in your Question?

@syhue The pairwise GCDs of p1-1p2-1p3-1 are all 2, as your code shows. Since this isn't 1, they aren't pairwise relatively prime, which is required for chrem. Perhaps you're supposed to divide out the 2s before doing chrem?

Everything after the error message is nonsense due to the error, so there's not much point talking about it until the error is fixed.

@Carl Love Here is a Maple worksheet with all the computations needed, and the final plots, as I outlined above. The plots match those from the paper. You should put a proper citation for the paper in here, and fill in the descriptions and units of the parameters. The plots could be dressed up a bit, but they clearly show that the computations are accurate.
 

Computations for "A mathematical model for chemoimmunotherapy of chronic lymphocytic leukemia"

Maple worksheet author: Carl Love <car.j.love@gmail.com> 14-Aug-2019

restart
:

local gamma: #Avoid potential conflict with Maple's predefined gamma constant.
#

#Numeric values of IVP parameters from the paper:
#
params:= [         #description                                         #units
                   #-----------------------------------------------------------
   r = 1e-2,       #                                                      /day
   k = 1e12,       #                                                      cells   
   c1 = 5e-11,     #                                                      /cells/day
   c2 = 1e-13,     #                                                      /cells/day
   mu = 8,         #                                                      /day
   lambda = 4.16,  #                                                      /day
   a = 2e3,        #                                                      mg
   q = 300,        #
   s0 = 3e5,       #
   d = 1e-3,       #
   rho = 1e-12,    #
   gamma = 1e2,    #
   delta = 1e4,    #
   b = 5e6,        #
   N0 = 2e10,      #Initial cancer cells                                  cell
   P0= 5e7,        #
   #symbolic parameters representing constant input functions:
   s(t)= s__inf,   #immunotherapty rate
   q(t)= q__inf    #chemotherapy rate
]:
t__max:= 3e4: #max integration time
#number of cancer cells remaining for patient to be considered cured:
N__inf:= 0.5:
#

ICs:= N(0) = N0, P(0) = P0, Q(0) = 0: #initial conditions

ODEs:=
   diff(N(t),t) = r*N(t)*(1 - N(t)/k) - c1*N(t)*P(t) - mu*N(t)*Q(t)/(a + Q(t)),
   diff(P(t),t) =
      s(t) + s0 - d*P(t) + rho*N(t)*P(t)/(gamma + N(t)) - c2*N(t)*P(t) -
      delta*P(t)*Q(t)/(b + Q(t)),
   diff(Q(t),t) = q(t) - lambda*Q(t)
:

<ODEs>; #This line is just to display the ODEs prettyprinted.

Vector(3, {(1) = diff(N(t), t) = r*N(t)*(1-N(t)/k)-c1*N(t)*P(t)-mu*N(t)*Q(t)/(a+Q(t)), (2) = diff(P(t), t) = s(t)+s0-d*P(t)+rho*N(t)*P(t)/(gamma+N(t))-c2*N(t)*P(t)-delta*P(t)*Q(t)/(b+Q(t)), (3) = diff(Q(t), t) = q(t)-lambda*Q(t)})

dsol:= dsolve(
   eval({ODEs, ICs}, params), numeric,
   'parameters'= [s__inf, q__inf],
   'events'= [[N(t)-N__inf, 'halt']]
);

proc (x_rkf45) local _res, _dat, _vars, _solnproc, _xout, _ndsol, _pars, _n, _i; option `Copyright (c) 2000 by Waterloo Maple Inc. All rights reserved.`; if 1 < nargs then error "invalid input: too many arguments" end if; _EnvDSNumericSaveDigits := Digits; Digits := 15; if _EnvInFsolve = true then _xout := evalf[_EnvDSNumericSaveDigits](x_rkf45) else _xout := evalf(x_rkf45) end if; _dat := Array(1..4, {(1) = proc (_xin) local _xout, _dtbl, _dat, _vmap, _x0, _y0, _val, _dig, _n, _ne, _nd, _nv, _pars, _ini, _par, _i, _j, _k, _src; option `Copyright (c) 2002 by Waterloo Maple Inc. All rights reserved.`; table( [( "complex" ) = false ] ) _xout := _xin; _pars := [s__inf = s__inf, q__inf = q__inf]; _dtbl := array( 1 .. 4, [( 1 ) = (array( 1 .. 26, [( 1 ) = (datatype = float[8], order = C_order, storage = rectangular), ( 2 ) = (datatype = float[8], order = C_order, storage = rectangular), ( 3 ) = ([Array(1..2, 1..21, {(1, 1) = 1.0, (1, 2) = .0, (1, 3) = 1.0, (1, 4) = .0, (1, 5) = .0, (1, 6) = .0, (1, 7) = 1.0, (1, 8) = undefined, (1, 9) = undefined, (1, 10) = undefined, (1, 11) = undefined, (1, 12) = undefined, (1, 13) = undefined, (1, 14) = undefined, (1, 15) = undefined, (1, 16) = undefined, (1, 17) = undefined, (1, 18) = undefined, (1, 19) = undefined, (1, 20) = undefined, (1, 21) = undefined, (2, 1) = 1.0, (2, 2) = .0, (2, 3) = 100.0, (2, 4) = .0, (2, 5) = .0, (2, 6) = .0, (2, 7) = .0, (2, 8) = undefined, (2, 9) = undefined, (2, 10) = 0.10e-6, (2, 11) = undefined, (2, 12) = .0, (2, 13) = undefined, (2, 14) = .0, (2, 15) = .0, (2, 16) = undefined, (2, 17) = undefined, (2, 18) = undefined, (2, 19) = undefined, (2, 20) = undefined, (2, 21) = undefined}, datatype = float[8], order = C_order), proc (t, Y, Ypre, n, EA) EA[1, 7+2*n] := Y[1]-.5; EA[1, 8+2*n] := 1; 0 end proc, proc (e, t, Y, Ypre) return 0 end proc, Array(1..1, 1..2, {(1, 1) = undefined, (1, 2) = undefined}, datatype = float[8], order = C_order)]), ( 4 ) = (Array(1..63, {(1) = 3, (2) = 3, (3) = 0, (4) = 0, (5) = 2, (6) = 0, (7) = 0, (8) = 0, (9) = 0, (10) = 0, (11) = 0, (12) = 0, (13) = 0, (14) = 0, (15) = 0, (16) = 1, (17) = 0, (18) = 0, (19) = 30000, (20) = 0, (21) = 0, (22) = 1, (23) = 4, (24) = 0, (25) = 1, (26) = 15, (27) = 1, (28) = 0, (29) = 1, (30) = 3, (31) = 3, (32) = 0, (33) = 1, (34) = 0, (35) = 0, (36) = 0, (37) = 0, (38) = 0, (39) = 0, (40) = 0, (41) = 0, (42) = 0, (43) = 1, (44) = 0, (45) = 0, (46) = 0, (47) = 0, (48) = 0, (49) = 0, (50) = 50, (51) = 1, (52) = 0, (53) = 0, (54) = 0, (55) = 0, (56) = 0, (57) = 0, (58) = 0, (59) = 10000, (60) = 0, (61) = 1000, (62) = 0, (63) = 0}, datatype = integer[8])), ( 5 ) = (Array(1..28, {(1) = .0, (2) = 0.10e-5, (3) = .0, (4) = 0.500001e-14, (5) = .0, (6) = .0, (7) = .0, (8) = 0.10e-5, (9) = .0, (10) = .0, (11) = .0, (12) = .0, (13) = 1.0, (14) = .0, (15) = .49999999999999, (16) = .0, (17) = 1.0, (18) = 1.0, (19) = .0, (20) = .0, (21) = 1.0, (22) = 1.0, (23) = .0, (24) = .0, (25) = 0.10e-14, (26) = .0, (27) = .0, (28) = .0}, datatype = float[8], order = C_order)), ( 6 ) = (Array(1..5, {(1) = 0.2e11, (2) = 0.5e8, (3) = 0., (4) = Float(undefined), (5) = Float(undefined)})), ( 7 ) = ([Array(1..4, 1..7, {(1, 1) = .0, (1, 2) = .203125, (1, 3) = .3046875, (1, 4) = .75, (1, 5) = .8125, (1, 6) = .40625, (1, 7) = .8125, (2, 1) = 0.6378173828125e-1, (2, 2) = .0, (2, 3) = .279296875, (2, 4) = .27237892150878906, (2, 5) = -0.9686851501464844e-1, (2, 6) = 0.1956939697265625e-1, (2, 7) = .5381584167480469, (3, 1) = 0.31890869140625e-1, (3, 2) = .0, (3, 3) = -.34375, (3, 4) = -.335235595703125, (3, 5) = .2296142578125, (3, 6) = .41748046875, (3, 7) = 11.480712890625, (4, 1) = 0.9710520505905151e-1, (4, 2) = .0, (4, 3) = .40350341796875, (4, 4) = 0.20297467708587646e-1, (4, 5) = -0.6054282188415527e-2, (4, 6) = -0.4770040512084961e-1, (4, 7) = .77858567237854}, datatype = float[8], order = C_order), Array(1..6, 1..6, {(1, 1) = .0, (1, 2) = .0, (1, 3) = .0, (1, 4) = .0, (1, 5) = .0, (1, 6) = 1.0, (2, 1) = .25, (2, 2) = .0, (2, 3) = .0, (2, 4) = .0, (2, 5) = .0, (2, 6) = 1.0, (3, 1) = .1875, (3, 2) = .5625, (3, 3) = .0, (3, 4) = .0, (3, 5) = .0, (3, 6) = 2.0, (4, 1) = .23583984375, (4, 2) = -.87890625, (4, 3) = .890625, (4, 4) = .0, (4, 5) = .0, (4, 6) = .2681884765625, (5, 1) = .1272735595703125, (5, 2) = -.5009765625, (5, 3) = .44921875, (5, 4) = -0.128936767578125e-1, (5, 5) = .0, (5, 6) = 0.626220703125e-1, (6, 1) = -0.927734375e-1, (6, 2) = .626220703125, (6, 3) = -.4326171875, (6, 4) = .1418304443359375, (6, 5) = -0.861053466796875e-1, (6, 6) = .3131103515625}, datatype = float[8], order = C_order), Array(1..6, {(1) = .0, (2) = .386, (3) = .21, (4) = .63, (5) = 1.0, (6) = 1.0}, datatype = float[8], order = C_order), Array(1..6, {(1) = .25, (2) = -.1043, (3) = .1035, (4) = -0.362e-1, (5) = .0, (6) = .0}, datatype = float[8], order = C_order), Array(1..6, 1..5, {(1, 1) = .0, (1, 2) = .0, (1, 3) = .0, (1, 4) = .0, (1, 5) = .0, (2, 1) = 1.544, (2, 2) = .0, (2, 3) = .0, (2, 4) = .0, (2, 5) = .0, (3, 1) = .9466785280815533, (3, 2) = .25570116989825814, (3, 3) = .0, (3, 4) = .0, (3, 5) = .0, (4, 1) = 3.3148251870684886, (4, 2) = 2.896124015972123, (4, 3) = .9986419139977808, (4, 4) = .0, (4, 5) = .0, (5, 1) = 1.2212245092262748, (5, 2) = 6.019134481287752, (5, 3) = 12.537083329320874, (5, 4) = -.687886036105895, (5, 5) = .0, (6, 1) = 1.2212245092262748, (6, 2) = 6.019134481287752, (6, 3) = 12.537083329320874, (6, 4) = -.687886036105895, (6, 5) = 1.0}, datatype = float[8], order = C_order), Array(1..6, 1..5, {(1, 1) = .0, (1, 2) = .0, (1, 3) = .0, (1, 4) = .0, (1, 5) = .0, (2, 1) = -5.6688, (2, 2) = .0, (2, 3) = .0, (2, 4) = .0, (2, 5) = .0, (3, 1) = -2.4300933568337584, (3, 2) = -.20635991570891224, (3, 3) = .0, (3, 4) = .0, (3, 5) = .0, (4, 1) = -.10735290581452621, (4, 2) = -9.594562251021896, (4, 3) = -20.470286148096154, (4, 4) = .0, (4, 5) = .0, (5, 1) = 7.496443313968615, (5, 2) = -10.246804314641219, (5, 3) = -33.99990352819906, (5, 4) = 11.708908932061595, (5, 5) = .0, (6, 1) = 8.083246795922411, (6, 2) = -7.981132988062785, (6, 3) = -31.52159432874373, (6, 4) = 16.319305431231363, (6, 5) = -6.0588182388340535}, datatype = float[8], order = C_order), Array(1..3, 1..5, {(1, 1) = .0, (1, 2) = .0, (1, 3) = .0, (1, 4) = .0, (1, 5) = .0, (2, 1) = 10.126235083446911, (2, 2) = -7.487995877607633, (2, 3) = -34.800918615557414, (2, 4) = -7.9927717075687275, (2, 5) = 1.0251377232956207, (3, 1) = -.6762803392806898, (3, 2) = 6.087714651678606, (3, 3) = 16.43084320892463, (3, 4) = 24.767225114183653, (3, 5) = -6.5943891257167815}, datatype = float[8], order = C_order)]), ( 9 ) = ([Array(1..3, {(1) = .1, (2) = .1, (3) = .1}, datatype = float[8], order = C_order), Array(1..3, {(1) = .0, (2) = .0, (3) = .0}, datatype = float[8], order = C_order), Array(1..3, {(1) = .0, (2) = .0, (3) = .0}, datatype = float[8], order = C_order), Array(1..3, {(1) = .0, (2) = .0, (3) = .0}, datatype = float[8], order = C_order), Array(1..3, {(1) = .0, (2) = .0, (3) = .0}, datatype = float[8], order = C_order), Array(1..3, 1..3, {(1, 1) = .0, (1, 2) = .0, (1, 3) = .0, (2, 1) = .0, (2, 2) = .0, (2, 3) = .0, (3, 1) = .0, (3, 2) = .0, (3, 3) = .0}, datatype = float[8], order = C_order), Array(1..3, 1..3, {(1, 1) = .0, (1, 2) = .0, (1, 3) = .0, (2, 1) = .0, (2, 2) = .0, (2, 3) = .0, (3, 1) = .0, (3, 2) = .0, (3, 3) = .0}, datatype = float[8], order = C_order), Array(1..3, {(1) = .0, (2) = .0, (3) = .0}, datatype = float[8], order = C_order), Array(1..3, 1..3, {(1, 1) = .0, (1, 2) = .0, (1, 3) = .0, (2, 1) = .0, (2, 2) = .0, (2, 3) = .0, (3, 1) = .0, (3, 2) = .0, (3, 3) = .0}, datatype = float[8], order = C_order), Array(1..3, 1..6, {(1, 1) = .0, (1, 2) = .0, (1, 3) = .0, (1, 4) = .0, (1, 5) = .0, (1, 6) = .0, (2, 1) = .0, (2, 2) = .0, (2, 3) = .0, (2, 4) = .0, (2, 5) = .0, (2, 6) = .0, (3, 1) = .0, (3, 2) = .0, (3, 3) = .0, (3, 4) = .0, (3, 5) = .0, (3, 6) = .0}, datatype = float[8], order = C_order), Array(1..3, {(1) = 0, (2) = 0, (3) = 0}, datatype = integer[8]), Array(1..5, {(1) = .0, (2) = .0, (3) = .0, (4) = .0, (5) = .0}, datatype = float[8], order = C_order), Array(1..5, {(1) = .0, (2) = .0, (3) = .0, (4) = .0, (5) = .0}, datatype = float[8], order = C_order), Array(1..5, {(1) = .0, (2) = .0, (3) = .0, (4) = .0, (5) = .0}, datatype = float[8], order = C_order), Array(1..5, {(1) = .0, (2) = .0, (3) = .0, (4) = .0, (5) = .0}, datatype = float[8], order = C_order), Array(1..3, {(1) = .0, (2) = .0, (3) = .0}, datatype = float[8], order = C_order), Array(1..6, {(1) = .0, (2) = .0, (3) = .0, (4) = .0, (5) = .0, (6) = .0}, datatype = float[8], order = C_order), Array(1..3, {(1) = 0, (2) = 0, (3) = 0}, datatype = integer[8])]), ( 8 ) = ([Array(1..5, {(1) = .0, (2) = .0, (3) = .0, (4) = .0, (5) = .0}, datatype = float[8], order = C_order), Array(1..5, {(1) = .0, (2) = .0, (3) = .0, (4) = .0, (5) = .0}, datatype = float[8], order = C_order), Array(1..3, {(1) = .0, (2) = .0, (3) = .0}, datatype = float[8], order = C_order), 0, 0]), ( 11 ) = (Array(1..6, 0..3, {(1, 1) = .0, (1, 2) = .0, (1, 3) = .0, (2, 0) = .0, (2, 1) = .0, (2, 2) = .0, (2, 3) = .0, (3, 0) = .0, (3, 1) = .0, (3, 2) = .0, (3, 3) = .0, (4, 0) = .0, (4, 1) = .0, (4, 2) = .0, (4, 3) = .0, (5, 0) = .0, (5, 1) = .0, (5, 2) = .0, (5, 3) = .0, (6, 0) = .0, (6, 1) = .0, (6, 2) = .0, (6, 3) = .0}, datatype = float[8], order = C_order)), ( 10 ) = ([proc (N, X, Y, YP) option `[Y[1] = N(t), Y[2] = P(t), Y[3] = Q(t)]`; YP[1] := 0.1e-1*Y[1]*(1-0.1e-11*Y[1])-0.5e-10*Y[1]*Y[2]-8*Y[1]*Y[3]/(0.2e4+Y[3]); YP[2] := Y[4]+0.3e6-0.1e-2*Y[2]+0.1e-11*Y[1]*Y[2]/(0.1e3+Y[1])-0.1e-12*Y[1]*Y[2]-0.1e5*Y[2]*Y[3]/(0.5e7+Y[3]); YP[3] := Y[5]-4.16*Y[3]; 0 end proc, -1, 0, 0, 0, 0, proc (t, Y, Ypre, n, EA) EA[1, 7+2*n] := Y[1]-.5; EA[1, 8+2*n] := 1; 0 end proc, proc (e, t, Y, Ypre) return 0 end proc, 0, 0]), ( 13 ) = (), ( 12 ) = (), ( 15 ) = ("rkf45"), ( 14 ) = ([0, 0]), ( 18 ) = ([]), ( 19 ) = (0), ( 16 ) = ([0, 0, 0, 0, 0, []]), ( 17 ) = ([proc (N, X, Y, YP) option `[Y[1] = N(t), Y[2] = P(t), Y[3] = Q(t)]`; YP[1] := 0.1e-1*Y[1]*(1-0.1e-11*Y[1])-0.5e-10*Y[1]*Y[2]-8*Y[1]*Y[3]/(0.2e4+Y[3]); YP[2] := Y[4]+0.3e6-0.1e-2*Y[2]+0.1e-11*Y[1]*Y[2]/(0.1e3+Y[1])-0.1e-12*Y[1]*Y[2]-0.1e5*Y[2]*Y[3]/(0.5e7+Y[3]); YP[3] := Y[5]-4.16*Y[3]; 0 end proc, -1, 0, 0, 0, 0, proc (t, Y, Ypre, n, EA) EA[1, 7+2*n] := Y[1]-.5; EA[1, 8+2*n] := 1; 0 end proc, proc (e, t, Y, Ypre) return 0 end proc, 0, 0]), ( 22 ) = (0), ( 23 ) = (0), ( 20 ) = ([]), ( 21 ) = (0), ( 26 ) = (Array(1..0, {})), ( 25 ) = (Array(1..0, {})), ( 24 ) = (0)  ] ))  ] ); _y0 := Array(0..5, {(1) = 0., (2) = 0.2e11, (3) = 0.5e8, (4) = 0., (5) = undefined}); _vmap := array( 1 .. 3, [( 1 ) = (1), ( 2 ) = (2), ( 3 ) = (3)  ] ); _x0 := _dtbl[1][5][5]; _n := _dtbl[1][4][1]; _ne := _dtbl[1][4][3]; _nd := _dtbl[1][4][4]; _nv := _dtbl[1][4][16]; if not type(_xout, 'numeric') then if member(_xout, ["start", "left", "right"]) then if _Env_smart_dsolve_numeric = true or _dtbl[1][4][10] = 1 then if _xout = "left" then if type(_dtbl[2], 'table') then return _dtbl[2][5][1] end if elif _xout = "right" then if type(_dtbl[3], 'table') then return _dtbl[3][5][1] end if end if end if; return _dtbl[1][5][5] elif _xout = "method" then return _dtbl[1][15] elif _xout = "storage" then return evalb(_dtbl[1][4][10] = 1) elif _xout = "leftdata" then if not type(_dtbl[2], 'array') then return NULL else return eval(_dtbl[2]) end if elif _xout = "rightdata" then if not type(_dtbl[3], 'array') then return NULL else return eval(_dtbl[3]) end if elif _xout = "enginedata" then return eval(_dtbl[1]) elif _xout = "enginereset" then _dtbl[2] := evaln(_dtbl[2]); _dtbl[3] := evaln(_dtbl[3]); return NULL elif _xout = "initial" then return procname(_y0[0]) elif _xout = "laxtol" then return _dtbl[`if`(member(_dtbl[4], {2, 3}), _dtbl[4], 1)][5][18] elif _xout = "numfun" then return `if`(member(_dtbl[4], {2, 3}), _dtbl[_dtbl[4]][4][18], 0) elif _xout = "parameters" then return [seq(_y0[_n+_i], _i = 1 .. nops(_pars))] elif _xout = "initial_and_parameters" then return procname(_y0[0]), [seq(_y0[_n+_i], _i = 1 .. nops(_pars))] elif _xout = "last" then if _dtbl[4] <> 2 and _dtbl[4] <> 3 or _x0-_dtbl[_dtbl[4]][5][1] = 0. then error "no information is available on last computed point" else _xout := _dtbl[_dtbl[4]][5][1] end if elif _xout = "function" then if _dtbl[1][4][33]-2. = 0 then return eval(_dtbl[1][10], 1) else return eval(_dtbl[1][10][1], 1) end if elif _xout = "map" then return copy(_vmap) elif type(_xin, `=`) and type(rhs(_xin), 'list') and member(lhs(_xin), {"initial", "parameters", "initial_and_parameters"}) then _ini, _par := [], []; if lhs(_xin) = "initial" then _ini := rhs(_xin) elif lhs(_xin) = "parameters" then _par := rhs(_xin) elif select(type, rhs(_xin), `=`) <> [] then _par, _ini := selectremove(type, rhs(_xin), `=`) elif nops(rhs(_xin)) < nops(_pars)+1 then error "insufficient data for specification of initial and parameters" else _par := rhs(_xin)[-nops(_pars) .. -1]; _ini := rhs(_xin)[1 .. -nops(_pars)-1] end if; _xout := lhs(_xout); _i := false; if _par <> [] then _i := `dsolve/numeric/process_parameters`(_n, _pars, _par, _y0) end if; if _ini <> [] then _i := `dsolve/numeric/process_initial`(_n-_ne, _ini, _y0, _pars, _vmap) or _i end if; if _i then `dsolve/numeric/SC/reinitialize`(_dtbl, _y0, _n, procname, _pars); if _Env_smart_dsolve_numeric = true and type(_y0[0], 'numeric') and _dtbl[1][4][10] <> 1 then procname("right") := _y0[0]; procname("left") := _y0[0] end if end if; if _xout = "initial" then return [_y0[0], seq(_y0[_vmap[_i]], _i = 1 .. _n-_ne)] elif _xout = "parameters" then return [seq(_y0[_n+_i], _i = 1 .. nops(_pars))] else return [_y0[0], seq(_y0[_vmap[_i]], _i = 1 .. _n-_ne)], [seq(_y0[_n+_i], _i = 1 .. nops(_pars))] end if elif _xin = "eventstop" then if _nv = 0 then error "this solution has no events" end if; _i := _dtbl[4]; if _i <> 2 and _i <> 3 then return 0 end if; if _dtbl[_i][4][10] = 1 and assigned(_dtbl[5-_i]) and _dtbl[_i][4][9] < 100 and 100 <= _dtbl[5-_i][4][9] then _i := 5-_i; _dtbl[4] := _i; _j := round(_dtbl[_i][4][17]); return round(_dtbl[_i][3][1][_j, 1]) elif 100 <= _dtbl[_i][4][9] then _j := round(_dtbl[_i][4][17]); return round(_dtbl[_i][3][1][_j, 1]) else return 0 end if elif _xin = "eventstatus" then if _nv = 0 then error "this solution has no events" end if; _i := [selectremove(proc (a) options operator, arrow; _dtbl[1][3][1][a, 7] = 1 end proc, {seq(_j, _j = 1 .. round(_dtbl[1][3][1][_nv+1, 1]))})]; return ':-enabled' = _i[1], ':-disabled' = _i[2] elif _xin = "eventclear" then if _nv = 0 then error "this solution has no events" end if; _i := _dtbl[4]; if _i <> 2 and _i <> 3 then error "no events to clear" end if; if _dtbl[_i][4][10] = 1 and assigned(_dtbl[5-_i]) and _dtbl[_i][4][9] < 100 and 100 < _dtbl[5-_i][4][9] then _dtbl[4] := 5-_i; _i := 5-_i end if; if _dtbl[_i][4][9] < 100 then error "no events to clear" elif _nv < _dtbl[_i][4][9]-100 then error "event error condition cannot be cleared" else _j := _dtbl[_i][4][9]-100; if irem(round(_dtbl[_i][3][1][_j, 4]), 2) = 1 then error "retriggerable events cannot be cleared" end if; _j := round(_dtbl[_i][3][1][_j, 1]); for _k to _nv do if _dtbl[_i][3][1][_k, 1] = _j then if _dtbl[_i][3][1][_k, 2] = 3 then error "range events cannot be cleared" end if; _dtbl[_i][3][1][_k, 8] := _dtbl[_i][3][1][_nv+1, 8] end if end do; _dtbl[_i][4][17] := 0; _dtbl[_i][4][9] := 0; if _dtbl[1][4][10] = 1 then if _i = 2 then try procname(procname("left")) catch:  end try else try procname(procname("right")) catch:  end try end if end if end if; return  elif type(_xin, `=`) and member(lhs(_xin), {"eventdisable", "eventenable"}) then if _nv = 0 then error "this solution has no events" end if; if type(rhs(_xin), {('list')('posint'), ('set')('posint')}) then _i := {op(rhs(_xin))} elif type(rhs(_xin), 'posint') then _i := {rhs(_xin)} else error "event identifiers must be integers in the range 1..%1", round(_dtbl[1][3][1][_nv+1, 1]) end if; if select(proc (a) options operator, arrow; _nv < a end proc, _i) <> {} then error "event identifiers must be integers in the range 1..%1", round(_dtbl[1][3][1][_nv+1, 1]) end if; _k := {}; for _j to _nv do if member(round(_dtbl[1][3][1][_j, 1]), _i) then _k := `union`(_k, {_j}) end if end do; _i := _k; if lhs(_xin) = "eventdisable" then _dtbl[4] := 0; _j := [evalb(assigned(_dtbl[2]) and member(_dtbl[2][4][17], _i)), evalb(assigned(_dtbl[3]) and member(_dtbl[3][4][17], _i))]; for _k in _i do _dtbl[1][3][1][_k, 7] := 0; if assigned(_dtbl[2]) then _dtbl[2][3][1][_k, 7] := 0 end if; if assigned(_dtbl[3]) then _dtbl[3][3][1][_k, 7] := 0 end if end do; if _j[1] then for _k to _nv+1 do if _k <= _nv and not type(_dtbl[2][3][4][_k, 1], 'undefined') then userinfo(3, {'events', 'eventreset'}, `reinit #2, event code `, _k, ` to defined init `, _dtbl[2][3][4][_k, 1]); _dtbl[2][3][1][_k, 8] := _dtbl[2][3][4][_k, 1] elif _dtbl[2][3][1][_k, 2] = 0 and irem(iquo(round(_dtbl[2][3][1][_k, 4]), 32), 2) = 1 then userinfo(3, {'events', 'eventreset'}, `reinit #2, event code `, _k, ` to rate hysteresis init `, _dtbl[2][5][24]); _dtbl[2][3][1][_k, 8] := _dtbl[2][5][24] elif _dtbl[2][3][1][_k, 2] = 0 and irem(iquo(round(_dtbl[2][3][1][_k, 4]), 2), 2) = 0 then userinfo(3, {'events', 'eventreset'}, `reinit #2, event code `, _k, ` to initial init `, _x0); _dtbl[2][3][1][_k, 8] := _x0 else userinfo(3, {'events', 'eventreset'}, `reinit #2, event code `, _k, ` to fireinitial init `, _x0-1); _dtbl[2][3][1][_k, 8] := _x0-1 end if end do; _dtbl[2][4][17] := 0; _dtbl[2][4][9] := 0; if _dtbl[1][4][10] = 1 then procname(procname("left")) end if end if; if _j[2] then for _k to _nv+1 do if _k <= _nv and not type(_dtbl[3][3][4][_k, 2], 'undefined') then userinfo(3, {'events', 'eventreset'}, `reinit #3, event code `, _k, ` to defined init `, _dtbl[3][3][4][_k, 2]); _dtbl[3][3][1][_k, 8] := _dtbl[3][3][4][_k, 2] elif _dtbl[3][3][1][_k, 2] = 0 and irem(iquo(round(_dtbl[3][3][1][_k, 4]), 32), 2) = 1 then userinfo(3, {'events', 'eventreset'}, `reinit #3, event code `, _k, ` to rate hysteresis init `, _dtbl[3][5][24]); _dtbl[3][3][1][_k, 8] := _dtbl[3][5][24] elif _dtbl[3][3][1][_k, 2] = 0 and irem(iquo(round(_dtbl[3][3][1][_k, 4]), 2), 2) = 0 then userinfo(3, {'events', 'eventreset'}, `reinit #3, event code `, _k, ` to initial init `, _x0); _dtbl[3][3][1][_k, 8] := _x0 else userinfo(3, {'events', 'eventreset'}, `reinit #3, event code `, _k, ` to fireinitial init `, _x0+1); _dtbl[3][3][1][_k, 8] := _x0+1 end if end do; _dtbl[3][4][17] := 0; _dtbl[3][4][9] := 0; if _dtbl[1][4][10] = 1 then procname(procname("right")) end if end if else for _k in _i do _dtbl[1][3][1][_k, 7] := 1 end do; _dtbl[2] := evaln(_dtbl[2]); _dtbl[3] := evaln(_dtbl[3]); _dtbl[4] := 0; if _dtbl[1][4][10] = 1 then if _x0 <= procname("right") then try procname(procname("right")) catch:  end try end if; if procname("left") <= _x0 then try procname(procname("left")) catch:  end try end if end if end if; return  elif type(_xin, `=`) and lhs(_xin) = "eventfired" then if not type(rhs(_xin), 'list') then error "'eventfired' must be specified as a list" end if; if _nv = 0 then error "this solution has no events" end if; if _dtbl[4] <> 2 and _dtbl[4] <> 3 then error "'direction' must be set prior to calling/setting 'eventfired'" end if; _i := _dtbl[4]; _val := NULL; if not assigned(_EnvEventRetriggerWarned) then _EnvEventRetriggerWarned := false end if; for _k in rhs(_xin) do if type(_k, 'integer') then _src := _k elif type(_k, 'integer' = 'anything') and type(evalf(rhs(_k)), 'numeric') then _k := lhs(_k) = evalf[max(Digits, 18)](rhs(_k)); _src := lhs(_k) else error "'eventfired' entry is not valid: %1", _k end if; if _src < 1 or round(_dtbl[1][3][1][_nv+1, 1]) < _src then error "event identifiers must be integers in the range 1..%1", round(_dtbl[1][3][1][_nv+1, 1]) end if; _src := {seq(`if`(_dtbl[1][3][1][_j, 1]-_src = 0., _j, NULL), _j = 1 .. _nv)}; if nops(_src) <> 1 then error "'eventfired' can only be set/queried for root-finding events and time/interval events" end if; _src := _src[1]; if _dtbl[1][3][1][_src, 2] <> 0. and _dtbl[1][3][1][_src, 2]-2. <> 0. then error "'eventfired' can only be set/queried for root-finding events and time/interval events" elif irem(round(_dtbl[1][3][1][_src, 4]), 2) = 1 then if _EnvEventRetriggerWarned = false then WARNING(`'eventfired' has no effect on events that retrigger`) end if; _EnvEventRetriggerWarned := true end if; if _dtbl[_i][3][1][_src, 2] = 0 and irem(iquo(round(_dtbl[_i][3][1][_src, 4]), 32), 2) = 1 then _val := _val, undefined elif type(_dtbl[_i][3][4][_src, _i-1], 'undefined') or _i = 2 and _dtbl[2][3][1][_src, 8] < _dtbl[2][3][4][_src, 1] or _i = 3 and _dtbl[3][3][4][_src, 2] < _dtbl[3][3][1][_src, 8] then _val := _val, _dtbl[_i][3][1][_src, 8] else _val := _val, _dtbl[_i][3][4][_src, _i-1] end if; if type(_k, `=`) then if _dtbl[_i][3][1][_src, 2] = 0 and irem(iquo(round(_dtbl[_i][3][1][_src, 4]), 32), 2) = 1 then error "cannot set event code for a rate hysteresis event" end if; userinfo(3, {'events', 'eventreset'}, `manual set event code `, _src, ` to value `, rhs(_k)); _dtbl[_i][3][1][_src, 8] := rhs(_k); _dtbl[_i][3][4][_src, _i-1] := rhs(_k) end if end do; return [_val] elif type(_xin, `=`) and lhs(_xin) = "direction" then if not member(rhs(_xin), {-1, 1, ':-left', ':-right'}) then error "'direction' must be specified as either '1' or 'right' (positive) or '-1' or 'left' (negative)" end if; _src := `if`(_dtbl[4] = 2, -1, `if`(_dtbl[4] = 3, 1, undefined)); _i := `if`(member(rhs(_xin), {1, ':-right'}), 3, 2); _dtbl[4] := _i; _dtbl[_i] := `dsolve/numeric/SC/IVPdcopy`(_dtbl[1], `if`(assigned(_dtbl[_i]), _dtbl[_i], NULL)); if 0 < _nv then for _j to _nv+1 do if _j <= _nv and not type(_dtbl[_i][3][4][_j, _i-1], 'undefined') then userinfo(3, {'events', 'eventreset'}, `reinit #4, event code `, _j, ` to defined init `, _dtbl[_i][3][4][_j, _i-1]); _dtbl[_i][3][1][_j, 8] := _dtbl[_i][3][4][_j, _i-1] elif _dtbl[_i][3][1][_j, 2] = 0 and irem(iquo(round(_dtbl[_i][3][1][_j, 4]), 32), 2) = 1 then userinfo(3, {'events', 'eventreset'}, `reinit #4, event code `, _j, ` to rate hysteresis init `, _dtbl[_i][5][24]); _dtbl[_i][3][1][_j, 8] := _dtbl[_i][5][24] elif _dtbl[_i][3][1][_j, 2] = 0 and irem(iquo(round(_dtbl[_i][3][1][_j, 4]), 2), 2) = 0 then userinfo(3, {'events', 'eventreset'}, `reinit #4, event code `, _j, ` to initial init `, _x0); _dtbl[_i][3][1][_j, 8] := _x0 else userinfo(3, {'events', 'eventreset'}, `reinit #4, event code `, _j, ` to fireinitial init `, _x0-2*_i+5.0); _dtbl[_i][3][1][_j, 8] := _x0-2*_i+5.0 end if end do end if; return _src elif _xin = "eventcount" then if _dtbl[1][3][1] = 0 or _dtbl[4] <> 2 and _dtbl[4] <> 3 then return 0 else return round(_dtbl[_dtbl[4]][3][1][_nv+1, 12]) end if else return "procname" end if end if; if _xout = _x0 then return [_x0, seq(evalf(_dtbl[1][6][_vmap[_i]]), _i = 1 .. _n-_ne)] end if; _i := `if`(_x0 <= _xout, 3, 2); if _xin = "last" and 0 < _dtbl[_i][4][9] and _dtbl[_i][4][9] < 100 then _dat := eval(_dtbl[_i], 2); _j := _dat[4][20]; return [_dat[11][_j, 0], seq(_dat[11][_j, _vmap[_i]], _i = 1 .. _n-_ne-_nd), seq(_dat[8][1][_vmap[_i]], _i = _n-_ne-_nd+1 .. _n-_ne)] end if; if not type(_dtbl[_i], 'array') then _dtbl[_i] := `dsolve/numeric/SC/IVPdcopy`(_dtbl[1], `if`(assigned(_dtbl[_i]), _dtbl[_i], NULL)); if 0 < _nv then for _j to _nv+1 do if _j <= _nv and not type(_dtbl[_i][3][4][_j, _i-1], 'undefined') then userinfo(3, {'events', 'eventreset'}, `reinit #5, event code `, _j, ` to defined init `, _dtbl[_i][3][4][_j, _i-1]); _dtbl[_i][3][1][_j, 8] := _dtbl[_i][3][4][_j, _i-1] elif _dtbl[_i][3][1][_j, 2] = 0 and irem(iquo(round(_dtbl[_i][3][1][_j, 4]), 32), 2) = 1 then userinfo(3, {'events', 'eventreset'}, `reinit #5, event code `, _j, ` to rate hysteresis init `, _dtbl[_i][5][24]); _dtbl[_i][3][1][_j, 8] := _dtbl[_i][5][24] elif _dtbl[_i][3][1][_j, 2] = 0 and irem(iquo(round(_dtbl[_i][3][1][_j, 4]), 2), 2) = 0 then userinfo(3, {'events', 'eventreset'}, `reinit #5, event code `, _j, ` to initial init `, _x0); _dtbl[_i][3][1][_j, 8] := _x0 else userinfo(3, {'events', 'eventreset'}, `reinit #5, event code `, _j, ` to fireinitial init `, _x0-2*_i+5.0); _dtbl[_i][3][1][_j, 8] := _x0-2*_i+5.0 end if end do end if end if; if _xin <> "last" then if 0 < 0 then if `dsolve/numeric/checkglobals`(op(_dtbl[1][14]), _pars, _n, _y0) then `dsolve/numeric/SC/reinitialize`(_dtbl, _y0, _n, procname, _pars, _i) end if end if; if _dtbl[1][4][7] = 0 then error "parameters must be initialized before solution can be computed" end if end if; _dat := eval(_dtbl[_i], 2); _dtbl[4] := _i; try _src := `dsolve/numeric/SC/IVPrun`(_dat, _xout) catch: userinfo(2, `dsolve/debug`, print(`Exception in solnproc:`, [lastexception][2 .. -1])); error  end try; if _dat[17] <> _dtbl[1][17] then _dtbl[1][17] := _dat[17]; _dtbl[1][10] := _dat[10] end if; if _src = 0 and 100 < _dat[4][9] then _val := _dat[3][1][_nv+1, 8] else _val := _dat[11][_dat[4][20], 0] end if; if _src <> 0 or _dat[4][9] <= 0 then _dtbl[1][5][1] := _xout else _dtbl[1][5][1] := _val end if; if _i = 3 and _val < _xout then Rounding := -infinity; if _dat[4][9] = 1 then error "cannot evaluate the solution further right of %1, probably a singularity", evalf[8](_val) elif _dat[4][9] = 2 then error "cannot evaluate the solution further right of %1, maxfun limit exceeded (see ?dsolve,maxfun for details)", evalf[8](_val) elif _dat[4][9] = 3 then if _dat[4][25] = 3 then error "cannot evaluate the solution past the initial point, problem may be initially singular or improperly set up" else error "cannot evaluate the solution past the initial point, problem may be complex, initially singular or improperly set up" end if elif _dat[4][9] = 4 then error "cannot evaluate the solution further right of %1, accuracy goal cannot be achieved with specified 'minstep'", evalf[8](_val) elif _dat[4][9] = 5 then error "cannot evaluate the solution further right of %1, too many step failures, tolerances may be too loose for problem", evalf[8](_val) elif _dat[4][9] = 6 then error "cannot evaluate the solution further right of %1, cannot downgrade delay storage for problems with delay derivative order > 1, try increasing delaypts", evalf[8](_val) elif _dat[4][9] = 10 then error "cannot evaluate the solution further right of %1, interrupt requested", evalf[8](_val) elif 100 < _dat[4][9] then if _dat[4][9]-100 = _nv+1 then error "constraint projection failure on event at t=%1", evalf[8](_val) elif _dat[4][9]-100 = _nv+2 then error "index-1 and derivative evaluation failure on event at t=%1", evalf[8](_val) elif _dat[4][9]-100 = _nv+3 then error "maximum number of event iterations reached (%1) at t=%2", round(_dat[3][1][_nv+1, 3]), evalf[8](_val) else if _Env_dsolve_nowarnstop <> true then `dsolve/numeric/warning`(StringTools:-FormatMessage("cannot evaluate the solution further right of %1, event #%2 triggered a halt", evalf[8](_val), round(_dat[3][1][_dat[4][9]-100, 1]))) end if; Rounding := 'nearest'; _xout := _val end if else error "cannot evaluate the solution further right of %1", evalf[8](_val) end if elif _i = 2 and _xout < _val then Rounding := infinity; if _dat[4][9] = 1 then error "cannot evaluate the solution further left of %1, probably a singularity", evalf[8](_val) elif _dat[4][9] = 2 then error "cannot evaluate the solution further left of %1, maxfun limit exceeded (see ?dsolve,maxfun for details)", evalf[8](_val) elif _dat[4][9] = 3 then if _dat[4][25] = 3 then error "cannot evaluate the solution past the initial point, problem may be initially singular or improperly set up" else error "cannot evaluate the solution past the initial point, problem may be complex, initially singular or improperly set up" end if elif _dat[4][9] = 4 then error "cannot evaluate the solution further left of %1, accuracy goal cannot be achieved with specified 'minstep'", evalf[8](_val) elif _dat[4][9] = 5 then error "cannot evaluate the solution further left of %1, too many step failures, tolerances may be too loose for problem", evalf[8](_val) elif _dat[4][9] = 6 then error "cannot evaluate the solution further left of %1, cannot downgrade delay storage for problems with delay derivative order > 1, try increasing delaypts", evalf[8](_val) elif _dat[4][9] = 10 then error "cannot evaluate the solution further right of %1, interrupt requested", evalf[8](_val) elif 100 < _dat[4][9] then if _dat[4][9]-100 = _nv+1 then error "constraint projection failure on event at t=%1", evalf[8](_val) elif _dat[4][9]-100 = _nv+2 then error "index-1 and derivative evaluation failure on event at t=%1", evalf[8](_val) elif _dat[4][9]-100 = _nv+3 then error "maximum number of event iterations reached (%1) at t=%2", round(_dat[3][1][_nv+1, 3]), evalf[8](_val) else if _Env_dsolve_nowarnstop <> true then `dsolve/numeric/warning`(StringTools:-FormatMessage("cannot evaluate the solution further left of %1, event #%2 triggered a halt", evalf[8](_val), round(_dat[3][1][_dat[4][9]-100, 1]))) end if; Rounding := 'nearest'; _xout := _val end if else error "cannot evaluate the solution further left of %1", evalf[8](_val) end if end if; if _EnvInFsolve = true then _dig := _dat[4][26]; if type(_EnvDSNumericSaveDigits, 'posint') then _dat[4][26] := _EnvDSNumericSaveDigits else _dat[4][26] := Digits end if; _Env_dsolve_SC_native := true; if _dat[4][25] = 1 then _i := 1; _dat[4][25] := 2 else _i := _dat[4][25] end if; _val := `dsolve/numeric/SC/IVPval`(_dat, _xout, _src); _dat[4][25] := _i; _dat[4][26] := _dig; [_xout, seq(_val[_vmap[_i]], _i = 1 .. _n-_ne)] else Digits := _dat[4][26]; _val := `dsolve/numeric/SC/IVPval`(eval(_dat, 2), _xout, _src); [_xout, seq(_val[_vmap[_i]], _i = 1 .. _n-_ne)] end if end proc, (2) = Array(0..0, {}), (3) = [t, N(t), P(t), Q(t)], (4) = [s__inf = s__inf, q__inf = q__inf]}); _vars := _dat[3]; _pars := map(rhs, _dat[4]); _n := nops(_vars)-1; _solnproc := _dat[1]; if not type(_xout, 'numeric') then if member(x_rkf45, ["start", 'start', "method", 'method', "left", 'left', "right", 'right', "leftdata", "rightdata", "enginedata", "eventstop", 'eventstop', "eventclear", 'eventclear', "eventstatus", 'eventstatus', "eventcount", 'eventcount', "laxtol", 'laxtol', "numfun", 'numfun', NULL]) then _res := _solnproc(convert(x_rkf45, 'string')); if 1 < nops([_res]) then return _res elif type(_res, 'array') then return eval(_res, 1) elif _res <> "procname" then return _res end if elif member(x_rkf45, ["last", 'last', "initial", 'initial', "parameters", 'parameters', "initial_and_parameters", 'initial_and_parameters', NULL]) then _xout := convert(x_rkf45, 'string'); _res := _solnproc(_xout); if _xout = "parameters" then return [seq(_pars[_i] = _res[_i], _i = 1 .. nops(_pars))] elif _xout = "initial_and_parameters" then return [seq(_vars[_i+1] = [_res][1][_i+1], _i = 0 .. _n), seq(_pars[_i] = [_res][2][_i], _i = 1 .. nops(_pars))] else return [seq(_vars[_i+1] = _res[_i+1], _i = 0 .. _n)] end if elif type(_xout, `=`) and member(lhs(_xout), ["initial", 'initial', "parameters", 'parameters', "initial_and_parameters", 'initial_and_parameters', NULL]) then _xout := convert(lhs(x_rkf45), 'string') = rhs(x_rkf45); if type(rhs(_xout), 'list') then _res := _solnproc(_xout) else error "initial and/or parameter values must be specified in a list" end if; if lhs(_xout) = "initial" then return [seq(_vars[_i+1] = _res[_i+1], _i = 0 .. _n)] elif lhs(_xout) = "parameters" then return [seq(_pars[_i] = _res[_i], _i = 1 .. nops(_pars))] else return [seq(_vars[_i+1] = [_res][1][_i+1], _i = 0 .. _n), seq(_pars[_i] = [_res][2][_i], _i = 1 .. nops(_pars))] end if elif type(_xout, `=`) and member(lhs(_xout), ["eventdisable", 'eventdisable', "eventenable", 'eventenable', "eventfired", 'eventfired', "direction", 'direction', NULL]) then return _solnproc(convert(lhs(x_rkf45), 'string') = rhs(x_rkf45)) elif _xout = "solnprocedure" then return eval(_solnproc) elif _xout = "sysvars" then return _vars end if; if procname <> unknown then return ('procname')(x_rkf45) else _ndsol := 1; _ndsol := _ndsol; _ndsol := pointto(_dat[2][0]); return ('_ndsol')(x_rkf45) end if end if; try _res := _solnproc(_xout); [seq(_vars[_i+1] = _res[_i+1], _i = 0 .. _n)] catch: error  end try end proc

t_cure:= proc(q_inf::realcons)
local t__cure, wl:= interface('warnlevel'= 0); #Suppress warnings.
   dsol('parameters'= [q__inf= q_inf]);
   dsol('eventenable'= {1}); #Reinitialize integration.
   t__cure:= eval(t, dsol(t__max));
   interface('warnlevel'= wl); #Restore its original value.
   t__cure
end proc
:  

#Set values of s__infinity to use:
S_infs:= [0.0, 4e5, 7e5]
:

#Using plot (a) from the paper, set the correspondence between s__infinity and the
#minimum value of q__infinity used.
q_min:= table(S_infs=~ [1e1, 1e1, 2e0]):
q_max:= 1e5 #It's the same for all plots.
:

for s_inf in S_infs do
   dsol('parameters'= [s__inf= s_inf]);
   #Semilogplot is used to get the correct logarithmic spacing for smaller q values:
   t_vs_q:= op([1,1], plots:-semilogplot(t_cure, q_min[s_inf]..q_max));
   #Perform and store computation D__chemo = q__infinity * t__cure:
   Data[s_inf]:= <t_vs_q | t_vs_q[..,1] *~ t_vs_q[..,2]>
od
:

#Plot (a):
plot(
   [seq(Data[s_inf][..,[1,3]], s_inf= S_infs)],
   axis[1,2]= [mode= log],
   view= [1e0..1e5, 1e3..1e6],
   legend= [seq(s__infinity= s_inf, s_inf= S_infs)],
   title= "(a) Chemo does as a function of the infusion rate",
   axes= boxed, gridlines= false
);

#Plot (b):
plot(
   [seq(Data[s_inf][..,[2,3]], s_inf= S_infs)],
   axis[1,2]= [mode= log],
   view= [1e0..1e5, 1e3..1e6],
   legend= [seq(s__infinity= s_inf, s_inf= S_infs)],
   title= "(a) Chemo does as a function of the time required for cure",
   axes= boxed, gridlines= false
);

 


 

Download Chemoimmunotherapy.mw

@tomleslie s(t) is the input function (or forcing function) of immunotherapy. Typically, it's a square wave, but for the purpose of generating plots (a) and (b), it's constant with value s_infinity. (Note: s0 <> s(0), unless by some extraordinary coincidence.) Likewise for q(t), which is the forcing function of chemotherapy.

@acer Vote up. So, I was wrong: It is possible (to some extent)[*1] to control the order of multiplicands within a `*` term. I did know that it was possible to use sort to control the order of terms in a `+` expression, but I didn't know that it also worked within the `*`s. Please let me know if I was wrong about anything else.

Would you please show some dismantle examples, as you hinted at, with some exposition? To start with, the distinction between SUM (aka `+`) and POLY seems capricious: 3*a*b*c + a*b*d is a POLY and 3/4*a*b*c + a*b*d is a SUM. Also, I am worried about increasing divergence between the type system and the low-level storage. And by your aside about dismantle above, did you mean that certain data structures in the kernel exist primarily to affect the GUI display at higher levels of prettyprint (or perhaps typesetting)? 

[*1] I say "to some extent" because I still don't think that it's possible to put numeric coefficients any place other than the beginning or to have two expressions with equal `*` terms in different orders.

I'm just restating your Question for those who might find your rambling style confusing:

Can DocumentTools:-Components:-VideoPlayer (or any similar command) be used to stream live video?

Your plots (a) and (b) have their vertical axes labelled D[chemo]. How is D[chemo] determined in terms of the quantities that you've already defined, such as Q(t)?

@Annonymouse Apparently, axis[1]= [mode= log] doesn't work very well when there are bars whose lengths---before taking the logarithm---are so short that they wouldn't appear on a non-log plot. So, we need to take the logs before plotting and then rescale the horizontal axis after. So, here's a better, hand-rolled logarithmic bar chart. Use this after you've assigned the list difference.

difs:= remove(x-> rhs(x)=0, (lhs=abs@rhs)~(difference));
n:= nops(difs);
M:= floor(min((log[10]@rhs)~(difs)));

plot(
   [seq([[0,k], [log[10](rhs(difs[k]))-M, k]], k= 1..n)],
   axis[1]= [tickmarks= [seq(k= typeset(10^nprintf("%d", k+M)), k= 1..-M, 2)], gridlines],
   axis[2]= [tickmarks= [seq(k= typeset(lhs(difs[k])), k= 1..n)]],
   thickness= 9, axes= boxed, view= [default, 0..n+1]
);

 

Let me know if you need any adjustments.

@Annonymouse As you've no doubt figured out on your own (since apparently you found my Answer useful), axis[2] refers to the vertical axis and axis[1] refers to the horizontal axis. I'm sorry that I didn't catch at first that you were using Statistics:-BarChart, which reverses (IMO) the usual roles of the two axes, so my Answer should've used axis[1].

Still, I'm not satisfied with the results. I'll come up with something that uses regular plot instead.

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